Skip to content
Chen Li

Chen Li

Senior Image Data Scientist | St. Jude Children's Research Hospital

Welcome! I specialize in microscopy image analysis, deep learning pipelines, and multi-agent AI systems for bioimaging research.

What I Do

🔬 Image Analysis - Developing advanced microscopy image processing tools and Fiji plugins
🤖 Deep Learning - Building PyTorch-based models for biomedical imaging applications
🧬 Research - Applying AI to cancer research and biological imaging at St. Jude
💻 Software Development - Creating tools in Python and Java for the scientific community

3D Imaging Examples

3D Mouse Brain Imaging

3D Cochlea Reconstruction

Highlights

  • 10+ peer-reviewed publications in biomedical imaging and optics
  • Fiji plugin developer with tools deployed on ImageJ update sites
  • Multi-agent AI systems for automated literature review and image analysis
  • Large-scale distributed training on HPC clusters (NVIDIA DGX A100/H100)

📫 Get in touch: chenli970701@gmail.com
🔗 Connect: LinkedIn | GitHub